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	<title>Inparablog &#187; Homology</title>
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		<title>Detecting homology</title>
		<link>http://www.myscience.nl/index.php/2008/07/14/detecting-homology/?utm_source=rss&amp;utm_medium=rss&amp;utm_campaign=detecting-homology</link>
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		<pubDate>Mon, 14 Jul 2008 18:00:52 +0000</pubDate>
		<dc:creator>John</dc:creator>
				<category><![CDATA[Bioinformatics]]></category>
		<category><![CDATA[Ramblings]]></category>
		<category><![CDATA[Homology]]></category>

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		<description><![CDATA[I thought I had them all, but I was wrong. When is something not sharing homology and when do you just fail to detect? I think this is still a big problem in bioinformatics&#8230; Bitscores or E-values? Which method? Blast, PSI-Blast, HMMER? Argggh!!!!]]></description>
			<content:encoded><![CDATA[<p>I thought I had them all, but I was wrong. When is something not sharing <a title="Wikipedia: homology" href="http://en.wikipedia.org/wiki/Homology_%28biology%29#Homology_of_sequences_in_genetics">homology</a> and when do you just fail to detect? I think this is still a big problem in bioinformatics&#8230; Bitscores or E-values? Which method? Blast, PSI-Blast, HMMER? Argggh!!!!</p>
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